Holy crap..I see the name Matt and nukes and I thought you were talking about me!
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From what I can tell, the "fuel tank" sequence was to occur just after Grievous murdered Shaak Ti in front of Anakin and Obi-Wan on The Invisible Hand. Once Grievous had impaled her from behind (minds out of the gutter!), loads of droids would converge on Anakin and Obi-Wan, who would then use their lightsabers to cut a hole in the floor (similar to what Anakin did with the elevator) and drop through to the next level.